GTEs R package

GTE model quantifies batch effects for individual genes in single-cell data.

Installation

To run GTEs package, install it from CRAN or GitHub through devtools directly:

install.packages('devtools')
library(devtools)
# devtools::install_github("yzhou1999/GTEs")
install.packages("GTEs", repos = c('https://yzhou1999.r-universe.dev', 'https://cloud.r-project.org'))

Usage

See below for usage examples.

• Group technical effects calculation and highly batch-sensitive genes (HBGs) selection

Dependencies

GTEs has been successfully installed and used on Windows, Linux and Mac OS (R version >= 4.0.2).

Citation

Zhou Y, Sheng Q, Wang G, Xu L, Jin S. 2025. Quantifying batch effects for individual genes in single-cell data. Nat Comput Sci 5(8): 612–620.