{
  "_id": "6a1f26e2b401979e7342236f",
  "Package": "GTEs",
  "Type": "Package",
  "Title": "Group Technical Effects",
  "Version": "1.0.0",
  "Language": "en-US",
  "Date": "2025-02-20",
  "Maintainer": "Yang Zhou <yangz@stu.hit.edu.cn>",
  "Authors@R": "person(given = \"Yang\",\nfamily = \"Zhou\",\nrole = c(\"aut\", \"cre\"),\nemail = \"yangz@stu.hit.edu.cn\")",
  "Description": "Implementation of the GTE (Group Technical Effects) model\nfor single-cell data. GTE is a quantitative metric to assess\nbatch effects for individual genes in single-cell data. For a\nsingle-cell dataset, the user can calculate the GTE value for\nindividual features (such as genes), and then identify the\nhighly batch-sensitive features. Removing these highly\nbatch-sensitive features results in datasets with low batch\neffects.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.3",
  "NeedsCompilation": "yes",
  "URL": "https://github.com/yzhou1999/GTEs,\nhttps://yzhou1999.github.io/GTEs/",
  "BugReports": "https://github.com/yzhou1999/GTEs/issues",
  "Repository": "https://yzhou1999.r-universe.dev",
  "Date/Publication": "2025-10-18 02:31:17 UTC",
  "RemoteUrl": "https://github.com/yzhou1999/gtes",
  "RemoteRef": "HEAD",
  "RemoteSha": "8e3b8e66be9c3ba75ae87bdb9a70b28c0fc453c3",
  "Packaged": {
    "Date": "2026-05-16 05:44:14 UTC",
    "User": "root"
  },
  "Author": "Yang Zhou [aut, cre]",
  "MD5sum": "b61a3eb7460821231696e8f29fcdec5a",
  "_user": "yzhou1999",
  "_type": "src",
  "_file": "GTEs_1.0.0.tar.gz",
  "_fileid": "108bdc5ff3da5d1be2c5786eb783c5b6a77eefb99894a32d1061f12c408c1aed",
  "_filesize": 30446994,
  "_sha256": "108bdc5ff3da5d1be2c5786eb783c5b6a77eefb99894a32d1061f12c408c1aed",
  "_created": "2026-05-16T05:44:14.000Z",
  "_published": "2026-06-02T18:54:26.592Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79148257996,
      "time": 133,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7030933188"
    },
    {
      "job": 79148257952,
      "time": 137,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7030933600"
    },
    {
      "job": 79148258018,
      "time": 131,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7030933010"
    },
    {
      "job": 79148257971,
      "time": 138,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7030933577"
    },
    {
      "job": 79148258077,
      "time": 188,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7030935353"
    },
    {
      "job": 79148258313,
      "time": 334,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7030949571"
    },
    {
      "job": 79148258401,
      "time": 154,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7030933063"
    },
    {
      "job": 79148258206,
      "time": 273,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7030944266"
    },
    {
      "job": 79148257425,
      "time": 171,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7030918909"
    },
    {
      "job": 79148257298,
      "time": 107,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7367025077"
    },
    {
      "job": 79148257873,
      "time": 163,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7030936215"
    },
    {
      "job": 79148258002,
      "time": 149,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7030934797"
    },
    {
      "job": 79148258105,
      "time": 106,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7030930476"
    }
  ],
  "_buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/25954125769",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/yzhou1999/gtes",
  "_commit": {
    "id": "8e3b8e66be9c3ba75ae87bdb9a70b28c0fc453c3",
    "author": "Yang Zhou <134399306+yzhou1999@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Update README.md",
    "time": 1760754677
  },
  "_maintainer": {
    "name": "Yang Zhou",
    "email": "yangz@stu.hit.edu.cn",
    "login": "yzhou1999",
    "uuid": 134399306
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "version": ">= 1.0.8",
      "role": "LinkingTo"
    },
    {
      "package": "RcppEigen",
      "role": "LinkingTo"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "matrixStats",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "RcppEigen",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    }
  ],
  "_owner": "yzhou1999",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-42",
      "n": 2
    }
  ],
  "_tags": [],
  "_stars": 16,
  "_contributors": [
    {
      "user": "yzhou1999",
      "count": 33,
      "uuid": 134399306
    }
  ],
  "_userbio": {
    "uuid": 134399306,
    "type": "user",
    "name": "Yang Zhou",
    "description": "Harbin Institute of Technology"
  },
  "_downloads": {
    "count": 174,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/GTEs"
  },
  "_devurl": "https://github.com/yzhou1999/gtes",
  "_pkgdown": "https://yzhou1999.github.io/GTEs/",
  "_searchresults": 3,
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/GTEs.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/yzhou1999/gtes",
  "_realowner": "yzhou1999",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2025-02-27"
    }
  ],
  "_exports": [
    "Run.GroupTechEffects",
    "Select.HBGs"
  ],
  "_help": [
    {
      "page": "group_onehot",
      "title": "Compute one-hot matrix for given data frame and variable (s)",
      "topics": [
        "group_onehot"
      ]
    },
    {
      "page": "Run.GroupTechEffects",
      "title": "Compute the group technical effects.",
      "topics": [
        "Run.GroupTechEffects"
      ]
    },
    {
      "page": "scale_data",
      "title": "Scale data matrix",
      "topics": [
        "scale_data"
      ]
    },
    {
      "page": "select_hbgs",
      "title": "Select HBGs using GTE vector.",
      "topics": [
        "select_hbgs"
      ]
    },
    {
      "page": "select_htgs",
      "title": "Select HTGs using GTE vector.",
      "topics": [
        "select_htgs"
      ]
    },
    {
      "page": "Select.HBGs",
      "title": "Select highly batch-sensitive genes (HBGs) under a group variable.",
      "topics": [
        "Select.HBGs"
      ]
    },
    {
      "page": "Select.HTGs",
      "title": "Select HTGs under a group variable.",
      "topics": [
        "Select.HTGs"
      ]
    }
  ],
  "_readme": "https://github.com/yzhou1999/gtes/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "dplyr",
    "generics",
    "glue",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "matrixStats",
    "pillar",
    "pkgconfig",
    "R6",
    "Rcpp",
    "RcppEigen",
    "rlang",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 3.9030899869919438,
  "_indexed": true,
  "_nocasepkg": "gtes",
  "_universes": [
    "yzhou1999"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-16T05:46:24.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "8e3b8e66be9c3ba75ae87bdb9a70b28c0fc453c3",
      "fileid": "f2416cca8eba2d93c70f021e506fc0ec32dab31919a1e13b9fdb479df76282c9",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/25954125769"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-16T05:46:20.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "8e3b8e66be9c3ba75ae87bdb9a70b28c0fc453c3",
      "fileid": "a9d397b434cd98cbc0e3191677682a9eb80aeb93df48426552628fc84eb48e5e",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/25954125769"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-16T05:46:19.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "8e3b8e66be9c3ba75ae87bdb9a70b28c0fc453c3",
      "fileid": "8f9e1743ab86c7b90f80f99f792787cd8cee4d9abff34f73c20936b94ac38034",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/25954125769"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-16T05:46:27.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "8e3b8e66be9c3ba75ae87bdb9a70b28c0fc453c3",
      "fileid": "12f0d1f2372584323450515793473d585f5d7e97031b42d6130813b2b69e167d",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/25954125769"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-05-16T05:46:44.000Z",
      "arch": "aarch64",
      "commit": "8e3b8e66be9c3ba75ae87bdb9a70b28c0fc453c3",
      "fileid": "a8c06ef9c99ec64360499378a1d0f1e377663c2698496abb0f0cd666a1eee54b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/25954125769"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-05-16T05:48:39.000Z",
      "arch": "x86_64",
      "commit": "8e3b8e66be9c3ba75ae87bdb9a70b28c0fc453c3",
      "fileid": "7609bc71eef4d0ba154445194818596f67a75a56b7952876bcb3940ff3205e8e",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/25954125769"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-05-16T05:46:21.000Z",
      "arch": "aarch64",
      "commit": "8e3b8e66be9c3ba75ae87bdb9a70b28c0fc453c3",
      "fileid": "36a7f52d899c8259e320563f39931f786add279f73d74be5dd48feaf324ad278",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/25954125769"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-05-16T05:47:49.000Z",
      "arch": "x86_64",
      "commit": "8e3b8e66be9c3ba75ae87bdb9a70b28c0fc453c3",
      "fileid": "75a64e0e17a99652806c771113eda09cc20b941384e5a9bb21831db25eaab337",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/25954125769"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-05-16T05:46:23.000Z",
      "arch": "x86_64",
      "commit": "8e3b8e66be9c3ba75ae87bdb9a70b28c0fc453c3",
      "fileid": "d17902af7ce481216988a7508ea1877a28808d0407fabf87eee37338f64ada44",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/25954125769"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-05-16T05:45:48.000Z",
      "arch": "x86_64",
      "commit": "8e3b8e66be9c3ba75ae87bdb9a70b28c0fc453c3",
      "fileid": "b4097f813db04c7de58268ac00b1d5d06596a5a7afeba24507ad1e698c1e6fb1",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/25954125769"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-05-16T05:45:32.000Z",
      "arch": "x86_64",
      "commit": "8e3b8e66be9c3ba75ae87bdb9a70b28c0fc453c3",
      "fileid": "899226ec9a7af7cf59678152b7a6c00300eb30e45a1df6970a6be356f1d78397",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/25954125769"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.0",
      "date": "2026-06-02T18:54:01.000Z",
      "arch": "emscripten",
      "commit": "8e3b8e66be9c3ba75ae87bdb9a70b28c0fc453c3",
      "fileid": "856d9ee1a146ef195837da2c8c9abd931808a7846f1b71cd9cf2d9e73de9af32",
      "status": "success",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/25954125769"
    }
  ]
}