{
  "_id": "6ad238f33c1b78c68c07b33c",
  "Package": "GTEs",
  "Type": "Package",
  "Title": "Group Technical Effects",
  "Version": "1.0.0",
  "Language": "en-US",
  "Date": "2025-02-20",
  "Maintainer": "Yang Zhou <yangz@stu.hit.edu.cn>",
  "Authors@R": "person(given = \"Yang\",\nfamily = \"Zhou\",\nrole = c(\"aut\", \"cre\"),\nemail = \"yangz@stu.hit.edu.cn\")",
  "Description": "Implementation of the GTE (Group Technical Effects) model\nfor single-cell data. GTE is a quantitative metric to assess\nbatch effects for individual genes in single-cell data. For a\nsingle-cell dataset, the user can calculate the GTE value for\nindividual features (such as genes), and then identify the\nhighly batch-sensitive features. Removing these highly\nbatch-sensitive features results in datasets with low batch\neffects.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.3",
  "NeedsCompilation": "yes",
  "URL": "https://github.com/yzhou1999/GTEs,\nhttps://yzhou1999.github.io/GTEs/",
  "BugReports": "https://github.com/yzhou1999/GTEs/issues",
  "Repository": "https://yzhou1999.r-universe.dev",
  "Date/Publication": "2026-10-16 14:24:24 UTC",
  "RemoteUrl": "https://github.com/yzhou1999/gtes",
  "RemoteRef": "HEAD",
  "RemoteSha": "778ebc177dd4e8e329f287a4a982ad43404ee2d6",
  "Packaged": {
    "Date": "2026-10-16 14:40:05 UTC",
    "User": "root"
  },
  "Author": "Yang Zhou [aut, cre]",
  "_user": "yzhou1999",
  "_type": "src",
  "_file": "GTEs_1.0.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/eb0ee08c97ebb21b49c8e5e13701920cbfb8f30acc4bd4ee7fe0e5bc0e509ec9",
  "_filesize": 30446742,
  "_sha256": "eb0ee08c97ebb21b49c8e5e13701920cbfb8f30acc4bd4ee7fe0e5bc0e509ec9",
  "_expires": "2027-01-24T14:47:11.000Z",
  "_created": "2026-10-16T14:40:05.000Z",
  "_published": "2026-10-16T14:47:15.486Z",
  "_buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/38917236786",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 117029266001,
      "time": 118,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "12053411417"
    },
    {
      "job": 117029266067,
      "time": 151,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "12053331655"
    },
    {
      "job": 117029265955,
      "time": 123,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "12054071020"
    },
    {
      "job": 117029266200,
      "time": 147,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "12052674992"
    },
    {
      "job": 117029266008,
      "time": 129,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "12053121855"
    },
    {
      "job": 117029265968,
      "time": 364,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "12053671639"
    },
    {
      "job": 117029266260,
      "time": 108,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "12053376522"
    },
    {
      "job": 117029266068,
      "time": 172,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "12053695962"
    },
    {
      "job": 117027851052,
      "time": 183,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12052394223"
    },
    {
      "job": 117029265916,
      "time": 122,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12053680819"
    },
    {
      "job": 117029266144,
      "time": 217,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "12052838112"
    },
    {
      "job": 117029266368,
      "time": 152,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "12054215050"
    },
    {
      "job": 117029266338,
      "time": 123,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "12052809051"
    },
    {
      "job": 117029266153,
      "time": 202,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "12052604089"
    },
    {
      "job": 117029266086,
      "time": 141,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "12054030088"
    }
  ],
  "_upstream": "https://github.com/yzhou1999/gtes",
  "_commit": {
    "id": "778ebc177dd4e8e329f287a4a982ad43404ee2d6",
    "author": "Yang Zhou <134399306+yzhou1999@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #3 from eddelbuettel/patch-1\n\nFor Eigen 5.0.* remove MappedSparseMatrix",
    "time": 1792160664
  },
  "_maintainer": {
    "name": "Yang Zhou",
    "email": "yangz@stu.hit.edu.cn",
    "login": "yzhou1999",
    "description": "Harbin Institute of Technology",
    "uuid": 134399306
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "version": ">= 1.0.8",
      "role": "LinkingTo"
    },
    {
      "package": "RcppEigen",
      "role": "LinkingTo"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "matrixStats",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "RcppEigen",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    }
  ],
  "_owner": "yzhou1999",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-42",
      "n": 2
    },
    {
      "week": "2026-42",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 16,
  "_contributors": [
    {
      "user": "yzhou1999",
      "count": 34,
      "uuid": 134399306
    },
    {
      "user": "eddelbuettel",
      "count": 1,
      "uuid": 673121
    }
  ],
  "_userbio": {
    "uuid": 134399306,
    "type": "user",
    "name": "Yang Zhou",
    "followers": 0,
    "description": "Harbin Institute of Technology"
  },
  "_downloads": {
    "count": 260,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/GTEs"
  },
  "_devurl": "https://github.com/yzhou1999/gtes",
  "_pkgdown": "https://yzhou1999.github.io/GTEs/",
  "_searchresults": 4,
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/GTEs.html",
    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/yzhou1999/gtes",
  "_realowner": "yzhou1999",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2025-02-27"
    }
  ],
  "_exports": [
    "Run.GroupTechEffects",
    "Select.HBGs"
  ],
  "_help": [
    {
      "page": "group_onehot",
      "title": "Compute one-hot matrix for given data frame and variable (s)",
      "topics": [
        "group_onehot"
      ]
    },
    {
      "page": "Run.GroupTechEffects",
      "title": "Compute the group technical effects.",
      "topics": [
        "Run.GroupTechEffects"
      ]
    },
    {
      "page": "scale_data",
      "title": "Scale data matrix",
      "topics": [
        "scale_data"
      ]
    },
    {
      "page": "select_hbgs",
      "title": "Select HBGs using GTE vector.",
      "topics": [
        "select_hbgs"
      ]
    },
    {
      "page": "select_htgs",
      "title": "Select HTGs using GTE vector.",
      "topics": [
        "select_htgs"
      ]
    },
    {
      "page": "Select.HBGs",
      "title": "Select highly batch-sensitive genes (HBGs) under a group variable.",
      "topics": [
        "Select.HBGs"
      ]
    },
    {
      "page": "Select.HTGs",
      "title": "Select HTGs under a group variable.",
      "topics": [
        "Select.HTGs"
      ]
    }
  ],
  "_readme": "https://github.com/yzhou1999/gtes/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "dplyr",
    "generics",
    "glue",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "matrixStats",
    "pillar",
    "pkgconfig",
    "R6",
    "Rcpp",
    "RcppEigen",
    "rlang",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 4.204119982655925,
  "_indexed": true,
  "_nocasepkg": "gtes",
  "_universes": [
    "yzhou1999"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-10-16T14:42:00.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "778ebc177dd4e8e329f287a4a982ad43404ee2d6",
      "fileid": "https://r2.ropensci.org/a84445a17e5b3456f3196fa5e2be71ffa254609c3980b9e28e5ad3f776ed31ca",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/38917236786"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-10-16T14:42:21.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "778ebc177dd4e8e329f287a4a982ad43404ee2d6",
      "fileid": "https://r2.ropensci.org/73f971fddffadeea066c09c7edf8fe4c09081251162c74bf78ed3729b2d417de",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/38917236786"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-10-16T14:42:12.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "778ebc177dd4e8e329f287a4a982ad43404ee2d6",
      "fileid": "https://r2.ropensci.org/d04013d30f0bfdd17999c0d6b2eaaf720f573d7901a203d3558614f584c3fe28",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/38917236786"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-10-16T14:42:18.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "778ebc177dd4e8e329f287a4a982ad43404ee2d6",
      "fileid": "https://r2.ropensci.org/9a83bf19e54c611364d30ab7e7c4ee8e0fe00f37f99ea219ead130a65bdc830a",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/38917236786"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-10-16T14:42:08.000Z",
      "arch": "aarch64",
      "commit": "778ebc177dd4e8e329f287a4a982ad43404ee2d6",
      "fileid": "https://r2.ropensci.org/c11f1dc5e44c6bb9c67eaebb7833822105e3016dea51628aec2315095d87bfb7",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/38917236786"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-10-16T14:44:37.000Z",
      "arch": "x86_64",
      "commit": "778ebc177dd4e8e329f287a4a982ad43404ee2d6",
      "fileid": "https://r2.ropensci.org/7a3d5e79b89374353ddede64c041536447ef0964c45a639e7b49041f21006ba3",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/38917236786"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-10-16T14:41:46.000Z",
      "arch": "aarch64",
      "commit": "778ebc177dd4e8e329f287a4a982ad43404ee2d6",
      "fileid": "https://r2.ropensci.org/c398457ce47aba71acd8b3eb1a7801ab2048255a96a71071747c019d19ebb8a9",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/38917236786"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-10-16T14:42:29.000Z",
      "arch": "x86_64",
      "commit": "778ebc177dd4e8e329f287a4a982ad43404ee2d6",
      "fileid": "https://r2.ropensci.org/1c6df1b9c46547fcfdfb87f29857229cbd219a559767d0de4e86df63553e10f4",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/38917236786"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.0",
      "date": "2026-10-16T14:42:27.000Z",
      "arch": "emscripten",
      "commit": "778ebc177dd4e8e329f287a4a982ad43404ee2d6",
      "fileid": "https://r2.ropensci.org/50759b73330453dd0f27d9dba604890831e35503818aabf400ae14a96e30592e",
      "status": "success",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/38917236786"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-10-16T14:43:20.000Z",
      "arch": "aarch64",
      "commit": "778ebc177dd4e8e329f287a4a982ad43404ee2d6",
      "fileid": "https://r2.ropensci.org/2be7f203ab8d925728828339a638ddd6500971e4e1c494dfb537eaaf2ed9c0f6",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/38917236786"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-10-16T14:41:19.000Z",
      "arch": "x86_64",
      "commit": "778ebc177dd4e8e329f287a4a982ad43404ee2d6",
      "fileid": "https://r2.ropensci.org/e56c192754c2e280b658014e1fa42a67caff2c845f3e68f9dfedc36dbdfce566",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/38917236786"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-10-16T14:41:32.000Z",
      "arch": "x86_64",
      "commit": "778ebc177dd4e8e329f287a4a982ad43404ee2d6",
      "fileid": "https://r2.ropensci.org/a70b5590f3f6cd976ff6a0a33b9157de65d761fd1770412e12570f92bc242f83",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/38917236786"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-10-16T14:43:11.000Z",
      "arch": "aarch64",
      "commit": "778ebc177dd4e8e329f287a4a982ad43404ee2d6",
      "fileid": "https://r2.ropensci.org/58cde1def59e4f54095509523aaeeb1a898f8b1b9dcfa436a9270302d6709ae6",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/38917236786"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-10-16T14:41:41.000Z",
      "arch": "x86_64",
      "commit": "778ebc177dd4e8e329f287a4a982ad43404ee2d6",
      "fileid": "https://r2.ropensci.org/1470ef8d188d7f9fb092768cb1934b46a79e8c41412aa590cd34972b90639059",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/yzhou1999/actions/runs/38917236786"
    }
  ]
}