Package: GTEs 1.0.0

GTEs: Group Technical Effects

Implementation of the GTE (Group Technical Effects) model for single-cell data. GTE is a quantitative metric to assess batch effects for individual genes in single-cell data. For a single-cell dataset, the user can calculate the GTE value for individual features (such as genes), and then identify the highly batch-sensitive features. Removing these highly batch-sensitive features results in datasets with low batch effects.

Authors:Yang Zhou [aut, cre]

GTEs_1.0.0.tar.gz
GTEs_1.0.0.zip(r-4.7)GTEs_1.0.0.zip(r-4.6)GTEs_1.0.0.zip(r-4.5)
GTEs_1.0.0.tgz(r-4.6-x86_64)GTEs_1.0.0.tgz(r-4.6-arm64)GTEs_1.0.0.tgz(r-4.5-x86_64)GTEs_1.0.0.tgz(r-4.5-arm64)
GTEs_1.0.0.tar.gz(r-4.7-arm64)GTEs_1.0.0.tar.gz(r-4.7-x86_64)GTEs_1.0.0.tar.gz(r-4.6-arm64)GTEs_1.0.0.tar.gz(r-4.6-x86_64)
GTEs_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GTEs/json (API)

# Install 'GTEs' in R:
install.packages('GTEs', repos = c('https://yzhou1999.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yzhou1999/gtes/issues

Pkgdown/docs site:https://yzhou1999.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

3.90 score 16 stars 3 scripts 174 downloads 2 exports 20 dependencies

Last updated from:8e3b8e66be. Checks:11 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64WARNING133
linux-devel-x86_64WARNING137
source / vignettesOK171
linux-release-arm64WARNING131
linux-release-x86_64WARNING138
macos-release-arm64WARNING154
macos-release-x86_64WARNING273
macos-oldrel-arm64WARNING188
macos-oldrel-x86_64WARNING334
windows-develWARNING163
windows-releaseWARNING106
windows-oldrelWARNING149
wasm-releaseOK107

Exports:Run.GroupTechEffectsSelect.HBGs

Dependencies:clidplyrgenericsgluelatticelifecyclemagrittrMatrixmatrixStatspillarpkgconfigR6RcppRcppEigenrlangtibbletidyselectutf8vctrswithr